2500-3000 for a turbo setup includes NEW components...no junk yard stuff...you can always cheap out but it will cost you more to fix mickey mouse setups in the end...call it paying for insurance
As far as the inexpensive NA setup...consider this...most kids pay between 2500-3000 for a B16 swap....get 130-145whp on avg and run maybe mid to low 14's
For about the same money maybe even slightly more...you will run low 13's to high 12's with traction....
A K series may be slightly faster...not by much and your looking at 4500-5K easy if you skimp here and there...most kids who have it done pay more than that easily...back in 03 when I was on the fence for a K swap it was 10-12K...ouch
So when you step back and realize you can have a 200+whp setup for so little cash its quite a surprise...but realize again the H2B adapter has not been around that long and B series swaps are still slightly "easier" because of the knowledge out there
Youll need everything a B series swap needs so your right about the axles, linkage, mounts etc...the big piece of the puzzle is the QSD kit...$750 shipped or so is about right...depending on the header used you may need a single wide radiator (stock in most civics) I usaully ditch A/C in my swaps but I dunno how you will do it...A/C can work if you so choose but you have to get a few things to make it work
As far as the ECU goes...I would run a chip'd ECU with software like ecTune and buy a real time ROM burner so you can dyno tune on the fly...saves time and money in the long run...lots of time and money if your serious...all together the ecu, software and chip burner should cost you maybe 450-500 or so NEW...you may find a few deals and get it cheaper but just giving you an idea....there is "free" software out there but they have a few bugs...for $150 ecTune is basically bug free and totally worth it.
As far as the motor and its setup goes -- power goals decide what parts youll want.
The hardest part is deciding on what pieces to use since they require sizable $$$ decisions....the RRC manifold looks great and youll need a QSD gasket adapter to fit it...then youll need to modify it to work with the old school IACV etc.. on the F20B setup...not hard but just another hurdle
NA power production is a team sport and you have to have the right combination of parts working together...thus testing of these various combinations becomes a full time job...X+Y+zz = L...well what if we do X+Y+zx? Sometimes it seems like the smallest of details but they all add up in the end....maintaining velocity while increasing the overall volume of the air....
So NA power isnt really inexpensive for those on the forefront because so many combinations have to be tested, tuned, changed, tuned, changed again, tuned....dyno time isnt cheap and time is something you can never get back....but most NA guys do it for the love, the science of it all and in the end the community overall benefits because instead of having to try out 30 combinations of intakes/manifolds/cams/fuel pressures etc...youll have a very good idea of the best combo for your goals and only have to purchase those parts that you need without overspending on parts you dont need.
So I am thankful the H2B community is so gun-ho about sharing info, tips and outcomes. It has made the swap seem like common sense when years ago the H motors were seen as a waste....if it werent for the prelude/accord community swapping these things in the stock/prices would have been super cheap/extinct ....
I paid quite a bit for my B18C5 swap in 02' .....it was a US motor, smog legal and one of I think maybe 550-700 motors in the united states...from 01...in Cali it went for a premium and I paid it...but the motor ran strong, helped me win a bracket racing championship and put a smile on my face everytime VTEC cracked with my open header

That motor only made 159whp in the trim I had it in for most of the season....after sometuning and a slight header upgrade DC421 to DC JDM I made 175whp/132ftlbs...even still...if my EK went 13.60's-13.70's on 159/125 8200rpm....how fast would it go with a simple F20B with 205-210whp and 145-150ftlbs@8200?
With some serious bolt-ons you can probably eek out 225-230whp....NA...completly reversable...just insane...12 sec daily NA EK on pump gas with a factory 2.0L? Daily driven low 11 sec/high 10 sec hatch on pump with a built motor?
Its really a good time for the NA guys...before you HAD to go turbo to run those times without a completely gutted CRX...now youll see more REAL STREET cars run hard with NA setups...
I just want to see more REAL STREET hatchs run 11's on pump....it scares the crap out of domestic guys every time they see a full interior, full glass Honda without a turbo roll up...do a burnout and run 11's without a bottle or a blower...no power adders...just 2.0-2.4L of 4cyl goodness...
The intake mani is a source of great debate right now for both ease of wiring/plumbing and power...IMO I want an RRC manifold (199-300) large plenum with short fat runners for top end power....plus no stupid IABs to worry about...